Haiwei SONG  
                       
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  PUBLICATIONS: (* as corresponding author)  
 

Research Papers

1. Ren W, Chen H, Sun Q, Tang X, Huang J, Song H* (2014)
Structural Basis of SOSS1 Complex Assembly and Recognition of ssDNA.
Cell Rep.
6, 982-91.
 
2. Wu D, Muhlrad D, Bowler MW, Liu Z, Parker R, Song H* (2014)
Lsm2 and Lsm3 bridge the interaction of the Lsm1-7 complex with Pat1 for decapping activation.
Cell Res
. 24, 233-46.

3. Fan H, Dong Y, Wu D, Bowler MW, Zhang L, Song H* (2013)
QsIA disrupts LasR dimerization in antiactivation of bacterial quorum sensing.
Proc Natl Acad Sci U S A
. 110, 20765-70.

4. Lai T, Cho H, Liu Z, Bowler MW, Piao S, Parker R, Kim YK, Song H* (2012)
Structural Basis of the PNRC2-Mediated Link between mRNA Surveillance and Decapping
Structure 20, 2025-37.

5. Lim SC, Bowler MW, Lai TF, Song H* (2012).
The Ighmbp2 helicase structure reveals the molecular basis for disease-causing mutations in DMSA1.
Nucleic Acids Res. 40,11009-22.

6. Deng Y, Schmid N, Wang C, Wang J, Pessi G, Wu D, Lee J, Aguilar C, Ahrens CH, Chang C, Song H, Eberl L, Zhang LH. (2012).
Cis-2-dodecenoic acid receptor RpfR links quorum-sensing signal perception with regulation of virulence through cyclic dimeric guanosine monophosphate turnover.
Proc Natl Acad Sci U S A. 109, 15479-84.

7. Pobbati AV, Chan SW, Lee I, Song H, Hong W. (2012)
Structural and functional similarity between the Vgll1-TEAD and the YAP-TEAD complexes.
Structure 20, 1135-40

8.Wu D, Lim SC, Dong Y, Wu J, Tao F, Zhou L, Zhang LH, Song H* (2012)
Structural Basis of Substrate Binding Specificity Revealed by the Crystal Structures of Polyamine Receptors SpuD and SpuE from Pseudomonas aeruginosa.
J Mol Biol. 416, 697-712.

9. Wu D, Jiang S, Bowler MW, Song H* (2012)
Crystal structures of Lsm3, Lsm4 and Lsm5/6/7 from Schizosaccharomyces pombe.
PLoS One. 7, e36768.

10. Chen L, Muhlrad D, Hauryliuk V, Cheng Z, Lim MK, Shyp V, Parker R and Song H* (2010)
Structure of the Dom34-Hbs1 Complex and implications for No-Go decay.
Nat. Struct. & Mol. Biol. 17, 1233-40.

11. Nissan T, Rajyaguru P, She M, Song H, Parker R. (2010).
Decapping activators in Saccharomyces cerevisiae act by multiple mechanisms.
Mol Cell. 39, 773-83.

12. Cheng Z, He YW, Lim SC, Qamra R, Walsh MA, Zhang LH, Song H.* (2010)
Structural Basis of the Sensor-Synthase Interaction in Autoinduction of the Quorum Sensing Signal DSF Biosynthesis.
Structure, 18, 199-209.

13. Chen L, Chan SW, Zhang X, Walsh M, Lim CJ, Hong W and Song H*(2010)
Structural basis of YAP recognition by TEAD4 in the Hippo pathway.
Genes & Development, 24, 290-300.

14. Henriksson N, Nilsson P, Wu M, Song H and Anders Virtanen A. (2010).
Recognition of adenosine residues by the active site of poly(a)-specific ribonuclease.
J Biol. Chem. 285, 163- 70.

15. Fan, JS, Cheng Z, Zhang J, Noble C, Zhou Z, Song H* and Yang D (2009).
Solution and crystal structures of mRNA exporter Dbp5p and its interaction with nucleotide.
J Mol. Biol. 388, 1-10.

16. Cheng Z, Saito K, Pisarev AV, Wada M, Pisareva VP, Pestova TV, Gajda M, Round A, Kong C, Lim M, Nakamura Y, Svergun DI, Ito K, Song H.* (2009).
Structural insights into eRF3 and stop codon recognition by eRF1.
Genes & Development 23, 1106-1118.

17. Wu M, Nilsson P, Henriksson N, Niedzwiecka A, Lim MK, Cheng Z, Kokkoris K, Virtanen A, Song H. * (2009). Structural basis of m7GpppG binding to poly(A)-specific ribonuclease (PARN).
Structure, 17, 276-286.

18. Loh PG, Yang HS, Walsh MA, Wang Q, Wang X, Cheng Z, Liu D, Song H.* (2009).
Structural basis for translational inhibition by the tumour suppressor Pdcd4.
EMBO J. 28, 274-285.

19. Huang H, Ruan H, Aw MY, Hussain A, Guo L, Gao C, Qian F, Leung T, Song H, Kimelman D, Wen Z, Peng J. (2008).
Mypt1-mediated spatial positioning of Bmp2-producing cells is essential for liver organogenesis.
Development, 135, 3209-18.

20. Noble CG, Dong JM, Manser E, Song H.* (2008).
Bcl-xL and UVRAG cause a monomer- dimer switch in Beclin1.
J Biol. Chem. 283, 2627-82.

21. Ling SH, Decker CJ, Walsh MA, She M, Parker R, Song H.* (2008).
Crystal structure of human Edc3 and its functional implications.
Mol. Cell. Biol. 28, 5965-76.

22. She M, Decker CJ, Svergun DI, Round A, Chen N, Muhlrad D, Parker R, Song H.* (2008).
Structural basis of Dcp2 recognition and activation by Dcp1.
Mol. Cell 29, 337-349.

23. Noble CG, Song H.* (2007).
MLN51 stimulates the RNA-helicase activity of eIF4AIII.
PLos One, 2:e303.

24. Gao, H., Zhou, Z., Rawat, U., Huang, C., Bouakaz, L., Wang, C., Cheng, Z., Liu, Y., Zavialov, A., Gursky, R., Sanyal, S., Ehrenberg, M., Frank, J. and Song H.* (2007).
RF3 Induces ribosomal conformational changes responsible for the dissociation of class-I release factor.
Cell 129, 929-941.

25. Cheng, Z., Muhlrad, D., Lim, M. K., Parker R. and Song H.* (2007).
Structural and functional insights into the human Upf1 helicase core.
EMBO J. 26, 253-264.

26. He YW, Wang C, Zhou L, Song H, Dow JM, Zhang LH. (2006).
Dual signaling functions of the hybrid sensor kinase RpfC of Xanthomonas campestris involve either phosphorelay or receiver domain-protein interaction.
J Biol. Chem. 281, 33414-21.

27. Lu L, Tai G, Wu M, Song H, Hong W. (2006).
Multilayer interactions determine the Golgi localization of GRIP golgins.
Traffic, 7, 1399-407.

28. She, M., Decker C.J., Chen, N., Tumati S., Parker R. and Song H.* (2006).
Crystal structure and functional analysis of Dcp2p from Schizosaccharomyces pombe.
Nat. Struct. & Mol. Biol. 13, 63-70.

29. Wu, M., Wang T., Loh E., Hong W. and Song H. * (2005).
Structural basis for recruitment of RILP by small GTPase Rab7.
EMBO J. 24, 1491-1501.

30. Wu, M., Reuter, M., Lilie, H., Liu, Y., Wahle, E. and Song, H.* (2005).
Structural insight into poly(A) binding and catalytic mechanism of human PARN.
EMBO J. 24, 4082-4093.

31. Chen N, Walsh MA, Liu Y, Parker R, Song H. * (2005).
Crystal structures of human DcpS in ligand-free and m7GDP-bound forms suggest a dynamic mechanism for scavenger mRNA decapping.
J Mol. Biol. 347, 707-18.

32. Cheng Z.H., Coller J., Parker R. and Song H. * (2005).
Crystal structure and functional analysis of DEAD-box protein Dhh1p.
RNA, 11, 1258-1270.

33. She, M., Decker, C.J., Sundramurthy, K., Liu, Y., Chen, N., Parker, R., and Song, H.* (2004).
Crystal structure of Dcp1p and its functional implications in mRNA decapping.
Nat. Struct. & Mol. Biol. 11, 249-56.

34. Wu, M., Lu, L., Hong, W. and Song, H.* (2004).
Structural basis for recruitment of GRIP domain golgin-245 by small GTPase Arl1.
Nat. Struct. & Mol. Biol. 11, 86-94.

35. Kong, C.G., Ito, K., Walsh, A. M., Wada, M., Liu, Y.Y., Kumar, S., Barford, D., Nakamura, Y. and Song, H.* (2004).
Crystal Structure and Functional Analysis of the Eukaryotic Class II Release Factor eRF3 from S. pombe.
Mol. Cell
14, 233-245.

36. Cheng, Z.H., Liu, Y.Y., Wang, C.H., Parker, R. and Song, H. * (2004).
Crystal structure of Ski8p, a WD-repeat protein with dual roles in mRNA metabolism and meiotic recombination. Protein Sci. 13, 2673-2684.

37. Johnson LN, De Moliner E, Brown NR, Song H, Barford D, Endicott JA, Noble ME. (2002).
Structural studies with inhibitors of the cell cycle regulatory kinase cyclin-dependent protein kinase 2.
Pharmacol Ther. 93, 113-24.

38. Song H, Hanlon N, Brow NR, Noble MEM, Johnson LN and Barford D. (2001).
Phospho-Protein/Protein Interactions Revealed by the Crystal Structure of Kinase Associated Phosphatase (KAP) in Complex with Phospho-CDK2.
Mol. Cell. 7, 615-626.

39. Song H, Mugnier P, Das AK, Webb HM, Evans DR, Tuite MF, Hemmings BA, Barford D. (2000)
The Crystal Structure of Human Eukaryotic Release Factor eRF1- Mechanism of Stop Codon Recognition and Peptidyl-tRNA Hydrolysis.
Cell, 100, 311-321.

40. Song H, Parsons MR, Rowsell S, Leonard G, Phillips SEV. (1999).
Crystal Structure of intact Elongation Factor Tu from Escherichia coli in GDP conformation at 2.0 Resolution.
J Mol. Biol. 285, 1245-1256.

41. Nakamura S, Matsushima M, Song H, Kikuchi M. (1996).
A Role of PDI in the Reductive Cleavage of Mixed Disulfides.
J. Biochem. 120, 525-530.

42. Song H, Phillips SE, Parsons MR, Maas R. (1996).
Crystallization and preliminary crystallographic analysis of RepA1, a replication control protein of the RepFIC replicon of enterotoxin plasmid EntP307.
Proteins, 25, 137-8.

43. Wan ZL, Chang WR, Jiang T, Song H, Zhang JP, Wang SG, Liang DC. (1996).
Combination of Phase Information from Isomorphous Crystal of R-phycoerythrin from Polysiphonia Urceolata. Progress in Natural Science, 6, 444-450.

44. Maenaka K, Matsushima M, Song H, Sunada F, Watanabe K, Kumagai I. (1995).
Dissection of Protein Carbohydrate Interactions in Mutant Hen Egg-White Lysozyme Complexes and Their Hydrolytic Activity.
J. Mol. Biol. 247, 281--293.

45. Yamada T, Song H, Inaka K, Schimada Y, Kikuchi M, Matsushima M. (1995).
Structure of A Conformationally Constrained Arg_Gly_Asp Sequence Inserted into Human Lysozyme.
J. Biol. Chem. 270, 5687-5690.

46. Song H, Inaka K, Maenaka K, Matsushima M. (1994).
Structural Changes of Active site Cleft and Different Sacchride Binding Modes in Human Lysozyme Co-Crystallized with Hexa- N_Acetyl-Chitohexaose at pH 4.0.
J. Mol. Biol. 244, 522-540.

47. Song H, Chang WR, Liang DC. (1993).
Studies on the crystal structure of [L-Met]B0 bovine insulin at 3.0A resolution.
Sci. China B. 36, 187-95.

Review Articles

1. Arribas-Layton M, Wu D, Lykke-Andersen J and Song H* (2013). 
Structural and functional control of the eukaryotic mRNA decapping machinery.
Biochim Biophys Acta. 1829 (6-7), 580-589.

2. Chan SW, Lim CJ, Chen L, Chong YF, Huang C, Song H, Hong W (2011)
The Hippo pathway in biological control and cancer development.
J Cell Physiol. 226, 928-39.

3. Ling SH, Qamra R, Song H* (2011)
Structural and functional insights into eukaryotic mRNA decapping.
Wiley Interdiscip Rev RNA. 2, 193-208.

4. Loh PG and Song H* (2010)
Structural and mechanistic insights into translation termination.
Curr. Opin. Struc. Biol. 20, 98-103.

5. Ling SHM and Song H* (2010).
Mechanistic insights into mRNA export through structures of Dbp5.
RNA Biol. 7, 23-27.

6. Chen L, Loh PG, Song H* (2010).
Structural and functional insights into the TEAD-YAP complex in the Hippo signaling pathway.
Protein Cell. 1, 1073-83.

7. Cheng Z, Morisawa G and Song H*. (2010)
Biochemical characterization of human Upf1 helicase.
Methods Mol Biol. 587:327-38.

8. Ling SH, Cheng Z and Song H* (2009)
Structural aspects of RNA helicases in eukaryotic mRNA decay.
Biosci. Rep. 29, 339-349.

9. Noble CG, Song H.* (2008).
Structural studies of elongation and release factors.
Cell Mol. Life Sci. 65, 1335-46.

10. Parker, R. and Song, H.* (2004).
The enzymes and control of eukaryotic mRNA turnover.
Nat. Struct. & Mol. Biol. 11, 121-7.

Book Chapters

1. Portia Gloria Loh and Haiwei Song* (2010)
Chapter 8, Superfamily 1 RNA helicases: Biology & Mechanism. In RNA helicases for the Biomolecular Sciences, edited by Eckhard Jankowsky (The Royal Society of Chemistry). ISBN: 978-1-84973-221-5; DOI:10.1039/9781849732215-00189

 

 
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