Liu, Y.M., Du, L.S., Osato, M., Teo, E.H., Qian, F., Jin, H., Zhen, F.H., Xu, J., Guo, L., Huang, H.H., Chen, J., Geisler, R., Jiang, Y.J., Peng, J.R.  and Wen, Z.L. (2007) The zebrafish udu gene encodes a novel nuclear factor and is essential for primitive erythroid cell development. Blood 110:99-106.

Hussain A., Cao, D.N., Peng, J.R. (2007) Identification of conserved tyrosine residues important for gibberellin-sensitivity of Arabidopsis RGL2 protein. Planta 226:475-483.

Cao, D.N., Cheng, H., Wu, W., Soo, H.M., and Peng, J.R. (2006) Gibberellin mobilizes distinct DELLA-dependent transcriptomes to regulate seed germination and floral development in Arabidopsis. Plant Physiol. 142: 509–525.

Cheng, W., Guo, L., Zhang, Z.H., Soo, H.M., Wen, C.M., Wu, W., and Peng J.R. (2006) HNF factors form a network to regulate liver-enriched genes in zebrafish. Dev. Biol. 294: 482-496.

Cao, D.N., Hussain, A., Cheng, H., and Peng, J.R. (2005) Loss of function of four DELLA genes leads to light- and gibberellin-independent seed germination in Arabidopsis. Planta. 223: 105-113.

Qian, F., Zhen, F.H., Ong, C., Jin, S.W., Soo, H.M., Stainier, D.Y.R., Lin, S., Peng, J.R., and Wen, Z.L. (2005) Microarray analysis of zebrafish cloche mutant using amplified cDNA and identification of potential downstream target genes. Developmental Dynamics. 233:1163-1172.
 
Wen, C.M., Zhang, Z.H., Ma, W.P., Xu, M., Wen Z.L., and Peng, J.R. (2005) Genome-wide identification of female-enriched genes in zebrafish. Developmental Dynamics. 232:171-179.

Chen, J., Li, W.X., Xie, D.X., Peng J.R., and Ding S.W. (2004) Viral virulence protein suppresses RNAi mediated defence but upregulates the role of miRNA in host gene expression. Plant Cell. 16:1302-1313. (Jinrong Peng and Shouwei Ding co-contributor)

Cheng, H., Qin, L.Q., Lee, S.C., Fu, X.D., Richards, D.E., Cao, D.N., Luo, D., Harberd, N.P., and Peng, J.R. (2004) Gibberellin regulates Arabidopsis floral development via suppression of DELLA protein function. Development. 131:1055-1064.

13. Hussian, A. and Peng, J.R. (2003) DELLA proteins and GA signalling in Arabidopsis. J. Plant Growth Regul. 22:134-140

Lo,J., Lee, S.C., Xu, M., Liu, F., Ruan, H., Eun, A., He, Y.W., Ma, W.P., Wang, W.F., Wen, Z.L., and Peng, J.R. (2003) 15,000 Unique Zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Genome Research. 13:455-466.

Peng, J.R., and Harberd, N.P. (2002) The role of GA-mediated signalling in the control of seed germination. Current Opinion in Plant Biology. 5:376-381.

Lee, S.C., Cheng, H., King, K.E., Wang, W.F., He Y.W., Hussian, A., Lo, J., Harberd, N.P., and Peng, J.R. (2002) Gibberellin regulates Arabidopsis seed germination via RGL2, a GAI/RGA-like gene whose expression is up-regulated following imbibition. Genes & Development. 16:646-658.

As first author or co-author:

Huang, H.Z., Lu, F.I., Jia, S.J., Meng, S., Cao, Y., Wang, Y.Q., Ma, W.P., Yin, K., Wen, Z.L., Peng, J.R., Rao, Z.H., Thisse, C., Thisse, B., Meng, A.M. (2007) Amotl2 is essential for cell movements in zebrafish embryo by regulating c-Src translocation. Development 134:979-988.

Meng, C.Y., Chen, J., Peng, J.R., and Wong S.M. (2006) Host-induced avirulance of Hibiscus chlorotic ringspot vitus mutants correlates with reduced silencing suppression activity. J. Gen. Virol. 87: 451-459.

Jin, H., Xu, J., Qian, F., Du, L., Tan, C.Y, Lin, Z.X., Peng, J.R., and Wen, Z.L. (2006)The 5’- zebrafish scl promoter targets transcription to the brain, spinal cord, and hematopoietic and endothelial progenitors. Developmental Dynamics.235:60-67.

Ren, C.M., Pan, J.W., Peng, W., Genschik, P., Hobbie, L., Hellmann, H., Estelle, M., Gao, B.D., Peng, J.R., Sun, C.Q., and Xie, D.X. (2005) Point mutations in Arabidopsis Cullin1 reveal its essential role in jasmonate response. Plant Journal 42:514-524.

Wu, W., Liu, X., Xu, M., Peng, J.R., and Setiono, R. (2005) A hybrid SOM-SVM approach for the zebrafish gene expression analysis. Genomics Proteomics Bioinformatics. 3:84-93.

Yu, H., Ito, T., Zhao, YX., Peng J.R., Kumar, P., and Meyerowitz, E. (2004) Floral homeotic genes are targets of gibberellin signaling in flower development. Proc. Natl. Acad. Sci. USA. 101:7827-7832.

Hynes, L.W., Richards, D.E., Peng J.R., and Harberd, N.P. (2003) Transgenic expression of the Arabidopsis DELLA proteins GAI and gai confers altered gibberellin response in tobacco. Transgenic Research. 12:707-714.

8. Fu, X.D., Richards, D.E., Ait-ali T., Hynes, L.W., Ougham H., Peng, J.R., and Harberd, N.P. (2002) Gibberellin-mediated proteasome-dependent degradation of the barley DELLA-protein SLN1 repressor. Plant Cell. 14:3191-3200.

Peng, J.R., Richards, D.E., Moritz, T., Ezura, H., Carol, P., and Harberd, N.P. (2002) Molecular and physiological characterization of Arabidopsis GAI alleles obtained in tageted Ds-tagging experiments. Planta. 214:591-596.

Fu, X.D., Sudhakar, D., Peng, J.R., Richards, D.E., Christou, P., and Harberd, N.P. (2001) Expression of Arabidopsis GAI in transgenic rice represses multiple gibberellin responses. Plant Cell. 13:1792-1802.
  
King, K.E, Carol P, Cowling R.J, Peng J.R., Richards D.E, et al. (2000) Genetic approaches to the understanding of gibberellin-media-ted plant growth regulation. In Molecular Approaches to the Understanding of Plant Hormones, ed. Palme, Schell. New York: Springer-Verlag.

Richards, D.E., Peng, J.R., and Harberd, N.P. (2000) Plant GRAS and metazoan STATs: one family? BioEssays. 22:573-577.

Peng, J.R., Richards, D.E., Hartley, N.M., Murphy, G.P., Devos, K.M., Flintham, J.E., Beales, J., Fish, L.J., Worland, A.J., Pelica, F., Sudhakar, D., Christou, P., Snape, J.W., Gale, M.D., and Harberd, N.P. (1999) ‘Green revolution’ genes encode mutant gibberellin response modulators. Nature. 400:256-261.

Peng, J.R., Richards, D.E., Moritz, T., Cano, A., and Harberd, N.P. (1999) Extragenic suppressors of the Arabidopsis gai mutation alter the dose-response relationship of diverse gibberellin responses. Plant Physiology. 119:1199-1208.

Harberd, N.P., King, K.E., Carol, P., Cowling R.J., Peng, J.R., and Richards, D.E (1998) Gibberellin: inhibitor of an inhibitor of ---? BioEssays. 20:1001-1008.

Peng, J.R., Carol, P., Richards, D.E., King, K.E., Cowling, R., Murphy, G.P., and Harberd, N.P. (1997) The Arabidopsis GAI gene defines a signalling pathway that negatively regulates gibberellin responses. Genes & Development. 11:3194-3205.

Peng, J.R. and Harberd, N.P. (1997) Gibberellin deficiency and response mutations suppress the stem elongation phenotype of phytochrome-deficient mutants of Arabidopsis. Plant Physiology. 113:1051-1058. 

Peng, J.R., and Harberd, N.P. (1997) Transposon-associated somatic gai-loss sectors in Arabidopsis. Plant Science. 130:181-188.

19. Carol, P., Peng, J.R., and Harberd, N.P. (1995) Isolation and preliminary characterization of gas1-1, a mutation causing partial suppression of the phenotype conferred by the gibberellin-insensitive (gai) mutation in Arabidopsis thaliana (L) Heyhn. Planta. 197:414-417.

Peng, J.R, and Harberd, N.P. (1993) Derivative alleles of the Arabidopsis gibberellin-insensitive (gai) mutation confer a wild-type phenotype. Plant Cell 5:351-360.

Whitelam, G.C., Jonson, E., Peng, J.R., Carol, P., Anderson, M., Cowl, J., and Harberd, N.P. (1993) Phytochrome A null mutants of Arabidopsis display a wild-type phenotype in white-light. Plant Cell 5:757-768.

Peng, J.R., and Sun, C. (1991) Purification and certain characteristics of a Rhamnose specific lectin in the haemolymph of Philosamia cynthia ricini. Chinese Journal of Biochemistry and Biophysics (in English) 24:279-285.

Peng, J.R., and Sun C. (1991) The dynamic changes of two lectins' activities in various tissues during different development stages of Philosamia cynthia ricini. Chinese Journal of Entomology (in Chinese) 34:135-140.

Peng, J.R., and Xu, T.S. (1990) 5-L-Oxoprolinase in Bombyx mori and the effects of juvenile hormone analogs ZR512. Chinese Journal of Entomology (in Chinese) 33:143-147