The Bioinformatic Support Network (BSN) is a virtual infrastructure comprising bioinformaticians currently at IMCB. If you have a bioinformatics problem that is related to an area of expertise listed, please contact the respective Group Leader before you approach the staff member for help.
Rachel LI Quantitative Proteomics Groups hxli@imcb.a-star.edu.sg
Area of expertise:
• Genome and proteome databases
• Mass spectrometry-based proteomics data analysis
• Large proteomics/mRNA data visualization
• Gene ontology analysis
Michelle LIAN Comparative Genomics mllian@imcb.a-star.edu.sg
Tel: 6586 9568
Please contact supervisor:
B Venkatesh mcbbv@imcb.a-star.edu.sg
Tel: 6586 9571
Area of expertise:
• Whole genome alignments and comparative analysis
• RNA-seq processing and transcriptome assembly
• Whole genome annotation using Ensembl and other programs
• Set-up and management of the Ensembl genome browser
• Development and management of genomic sequences and MySQL databases
• Programming: Perl/BioPerl, basic HTML, SQL, Ensembl API
Diana LOW (BII) Chromatin, Epigenetics and Differentiation dianal@bii.a-star.edu.sg
Area of expertise:
• Epigenetics, in particular histone arginine methylations, in relation to differentiation, development and cancer.
• Human and mouse data in these areas.
• Standard chip-seq and gene expression (microarray) platforms, RNA-sequencing methodologies and applications.
• Data analysis and visualization.
• Programming languages are used as needed.
• In-house MySQL-Python-R-PHP framework for data analysis.
• Development of statistical/analytical tools using R/tcltk.
Julius MULLER Chromatin, Epigenetics and Differentiation jmuller@imcb.a-star.edu.sg
Area of expertise:
• Transcriptional regulation, genomics and epigenetics.
• State-of-the-art algorithms and self-developed scripts and programs to analyse datasets related to these scientific topics.
• Data from ChIP-Seq, RNA-Seq, microarray and other large scale experiments are qualitatively analysed, statistically evaluated, efficiently stored, integrated, set into a biological context and visualized to facilitate the interpretation of the results.
• Planning and executing of functional genomics projects.
Alvin NG Comparative Genomics yjng@imcb.a-star.edu.sg
Tel: 6586 9568
Please contact supervisor:
B Venkatesh mcbbv@imcb.a-star.edu.sg
Tel: 6586 9571
Area of expertise:
• Whole genome comparisons
• Statistical Data Mining (Feature selection)
• Machine Learning (SVM, Neural Networks, Regression
• Programming Languages: MATLAB, R, Perl, Python
Ahmed SAYADI Liver Cancer Genetics ahmeds@imcb.a-star.edu.sg
Area of expertise:
• Programming languages (Perl /Bioperl)
• Bioconductor
• Protein-protein interactions (Cytoscape)
• Linear motifs (you can take a look to my website (http://www.biocomputing.it/modipath/)
• Cancer genomics
Area of expertise:
• Next Generation Sequencing Data Analysis
• Microarray Data Analysis
• RNAi screen analysis
• Software Development and Graphical User Interface Programming
• Python, Perl, MATLAB, R and Database Programming
Weimiao YU Central Imaging facility wmyu@imcb.a-star.edu.sg
Tel: 6586 9798
Area of expertise:
• Cellular image segmentation (2D\3D) and cell tracking (4D);
• 3D reconstruction of biological samples;
• Biological image processing, quantitative analysis and bio-imaging informatics;
• Neurite tracing and quantification of neurites;
• Pattern recognition and kernel machine learning.
(C) Copyright 2012 Institute of Molecular and Cell Biology, A*STAR Singapore.
hxli@imcb.a-star.edu.sg
